PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00160g01038.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 542aa    MW: 56934 Da    PI: 6.7431
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00160g01038.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.4e-07173217144
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHH..HHTTTS-HHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIar..tmgkgRtlkqcksrw 44 
                               r++W+t Ed  l+ av++ G g+W+ I +       Rt+ q+  rw
  Peaxi162Scf00160g01038.1 173 RKPWSTAEDMELIAAVQKCGEGNWANIVKgdFK-GDRTPSQLSQRW 217
                               789**********************99652133.477777777777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.402168225IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-12169221IPR009057Homeodomain-like
SuperFamilySSF466895.02E-12170223IPR009057Homeodomain-like
SMARTSM007179.6E-9172223IPR001005SANT/Myb domain
PfamPF002495.6E-6173217IPR001005SANT/Myb domain
CDDcd116607.64E-14174222No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
TTVLGVLQEV AGQVITDVKI DWNALVKKTT TGITNAREYQ MLWRHLAYRH GLLDGFDDGA  60
QPLDDDSDLE YELEASPAVS NEASAEAAAC VKVLIASGAS SDANMVNGST VEAPLTINVP  120
NGQTSGTGPE NSSHGTSMHG TNITVPVAVP TMAAEGLDTH GPATTTLPAR RKRKPWSTAE  180
DMELIAAVQK CGEGNWANIV KGDFKGDRTP SQLSQRWAII RKRKGTMVGN GSQLSEAQLA  240
ARRAMSLALN MPMGDKLKAA CPIGAGAPKR PSPKPATSPD SMVKAAAVAA GARIATPSGA  300
VSLLKAAQSK PALCNIPGGG PAVKPPILGN TNGLPSNVHF IRTGLVSRST GPSNASRLGT  360
QQVLGHPPKP ALPAVQPNSV DTPSRSNTSA EPDHPTCPQV AELEVNTKQE LLQKNQAVAL  420
SNVQKDKPVG DLDASGDNPL PPQVQQHRPT ASGNPLIKKV EDQTFVLDDV PKEHRQEDQD  480
SHNANAPSVQ VQKKVIDLPS QEIASNYTND ASIAPARPEK ESAEEGDPSK APARIELIFI  540
QS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009597578.10.0PREDICTED: uncharacterized protein LOC104093530
RefseqXP_009597579.10.0PREDICTED: uncharacterized protein LOC104093530
TrEMBLA0A0V0ILC60.0A0A0V0ILC6_SOLCH; Putative ovule protein
STRINGSolyc12g087970.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34342237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.11e-66MYB_related family protein